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Tag: R

Tutorials

Creating a simple pharmacometric Shiny application with mrgsolve in R – Part 2

Shiny applications are a great way to show your complicated models in an interactive way. In recent years, many different examples have been published online showcasing a wide range of …

Tutorials

Creating a simple pharmacometric Shiny application with mrgsolve in R – Part 1

This two part series will show you how to create a simple pharmacometric Shiny application using the mrgsolve package in R. I think that Shiny applications are the most promising way …

VPC Tutorial

A step-by-step guide to prediction corrected visual predictive checks (VPC) of NONMEM models

Introduction Back in 2011, a very nice paper introducing the prediction corrected VPC was published by Bergstrand et al, titled: “Prediction-Corrected Visual Predictive Checks for Diagnosing Nonlinear Mixed-Effects Models” In …

Tutorials

Visualizing the NONMEM model fit in R using mrgsolve – with code

It is difficult to grasp what non-linear mixed effects modelling software is actually doing when you start a run. Furthermore, the iteration prints that you see in the console (when …

VPC Tutorial

A step-by-step guide to percentile visual predictive checks (VPC) of NONMEM models

This blog is an extension on the previously discussed scatter VPC. A percentile visual predictive check (VPC) can be used to compare the distribution of the observations with the simulated distributions …

VPC Tutorial

A step-by-step guide to confidence interval visual predictive checks (VPC) of NONMEM models

Last time, we focused on the percentile VPC, which was already quite an improvement to the scatter VPC but one may wonder when looking at a percentile VPC, how certain …

VPC Tutorial

A step-by-step guide to scatter visual predictive checks (VPC) of NONMEM models

There are many different ways to evaluate model performance, and sometimes it seems that there are even more ways to use a visual predictive check (VPC) for your population PK …

Tutorials

A step-by-step guide to goodness of fit figures of NONMEM models in R using ggplot2

Model evaluation is a critical step in model development. A very good paper on how to evaluate continuous data pharmacometric models was published by Nguyen et al. in 2017, this …

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